PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087061.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 290aa    MW: 31229.3 Da    PI: 9.1813
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-063760225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++Gd C+F H
  XP_011087061.1 37 KSKPCTKFFSTSGCSFGDACHFQH 60
                    7789*******************9 PP

2zf-CCCH24.64.3e-0896121227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k +lC+ f     C++Gd+C+FaH++
  XP_011087061.1  96 KSKLCNKFNTPEGCRFGDKCHFAHSE 121
                     6789********************95 PP

3zf-CCCH22.22.4e-07257281126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C  f + G C +G+rC+FaH+
  XP_011087061.1 257 YKKKMCEKFPK-GLCTFGERCHFAHS 281
                     8999*******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.873562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.9673563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53661IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-63760IPR000571Zinc finger, CCCH-type
PfamPF146080.544360No hitNo description
SuperFamilySSF902297.46E-893126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-1293126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.34794122IPR000571Zinc finger, CCCH-type
SMARTSM003560.04296121IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-596121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.72E-15159234IPR004088K Homology domain, type 1
SMARTSM003222.7E-11162232IPR004087K Homology domain
PROSITE profilePS5008414.844163227IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.8E-15163231IPR004088K Homology domain, type 1
PfamPF000135.2E-11165227IPR004088K Homology domain, type 1
CDDcd001053.75E-15165232No hitNo description
Gene3DG3DSA:4.10.1000.109.8E-14253288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8254287IPR000571Zinc finger, CCCH-type
SMARTSM003560.046256282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389257283IPR000571Zinc finger, CCCH-type
PfamPF146080.052262280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDFGRKRGRL DAAFSGNGGF KKSKEEMDSF TTGVGSKSKP CTKFFSTSGC SFGDACHFQH  60
YVPGYSAHAQ LANLGANNAL PVGRNAFTDG PTPTMKSKLC NKFNTPEGCR FGDKCHFAHS  120
EMELGMPPVP GYEDPRVMGQ IGGFPQRLES SQHGLPVGNF GASATAKISI DASFAGAIIG  180
KNGVNSRQIC RQTGVKLSIK DHDTDPNQRN IELEGTFDQI KEASAVVRHL IMNISASSSR  240
TEKPMGAPTQ GASPSHYKKK MCEKFPKGLC TFGERCHFAH SASELRNPLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087061.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-98C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A022QHP91e-155A0A022QHP9_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000161951e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.19e-71C3H family protein